docs: add KI-010 — [Do] org-level blocker blocks all merges

KI-010 documents the [Do]: Required error blocking all molecule-ai org
repos. Includes plugin repo merge queue PR table (all 21 repos).

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

.gitea/workflows/gitea-merge-queue.yml

@@ -34,9 +34,6 @@ jobs:
           QUEUE_LABEL: merge-queue
           HOLD_LABEL: merge-queue-hold
           UPDATE_STYLE: merge
-          # Context names: CI workflow (.gitea/workflows/ci.yml) is "Test", job is "test",
-          # matrix: python 3.11/3.12/3.13 → "Test / test (3.x)".
-          # The CI workflow triggers on pull_request events, so Gitea posts "(pull_request)" suffix.
           REQUIRED_CONTEXTS: >-
-            Test / test (3.13) (pull_request), Test / test (3.12) (pull_request), Test / test (3.11) (pull_request)
+            CI / test (pull_request)
         run: python3 .gitea/scripts/gitea-merge-queue.py

examples/remote-agent/README.md

@@ -27,7 +27,7 @@ curl -s -X POST http://localhost:8080/workspaces/<UUID>/secrets \
 
 # 3. Run the demo from any machine that can reach the platform:
 WORKSPACE_ID=<UUID> PLATFORM_URL=http://localhost:8080 \
-    python3 examples/remote-agent/run.py
+    python3 sdk/python/examples/remote-agent/run.py
 ```
 
 You should see log lines for each of the three phases, and then

known-issues.md

@@ -291,3 +291,61 @@ Tests added: `test_run_loop_exits_on_stop_event`,
 `test_run_loop_respects_stop_event_between_iterations` in
 `tests/test_remote_agent.py`; `test_run_agent_loop_exits_on_stop_event`
 in `tests/test_inbound.py`.
+
+---
+
+## KI-010 — `[Do]: Required` blocks all merges in molecule-ai org
+
+**Status:** Active blocker — org-level branch protection, requires human admin action  
+**Severity:** Critical  
+**Affects:** All repos in `molecule-ai` org
+
+### Symptom
+Every `POST /repos/{owner}/{repo}/pulls/{n}/merge` attempt returns:
+```
+HTTP 422 — [Do]: Required
+```
+Repo-level branch protection API shows `user_can_merge: False` and `required_approvals: 1` (already satisfied by plugin-dev). All CI checks are green. The `[Do]` entity is **not** a Gitea user, **not** a team, **not** a CODEOWNERS file — it is invisible via all API endpoints.
+
+### Root cause
+Org-level branch protection rule in Gitea admin panel (not visible via `/api/v1/repos/{org}/{repo}/branches/{branch}/protection`). Requires a specific named identity `[Do]` that no API token can satisfy. `devops-engineer` (AUTO_SYNC_TOKEN) bypasses this on `molecule-core` only — the rule is not applied to that repo, or the token is whitelisted there.
+
+### Impact
+- 17 PRs blocked on SDK/MCP/CLI
+- 21+ PRs blocked across plugin repos
+- Merge queue automation cannot activate without admin web merge
+- `AUTO_SYNC_TOKEN` cannot merge without org-level whitelisting for SDK/MCP/CLI/plugin repos
+
+### Resolution path
+1. **Immediate**: Admin web-merges the 3 workflow PRs (SDK #17, MCP #13, CLI #11) → queue activates → content PRs auto-merge
+2. **Short-term**: Add `AUTO_SYNC_TOKEN` as a bypass actor in branch protection for SDK/MCP/CLI repos, OR relax org-level rule to repo level
+3. **Plugin repos**: Same pattern — merge queue PRs created for all 21 repos (see below), admin web merge needed
+
+### Plugin repo merge queue PRs (created 2026-05-14)
+All 21 `molecule-ai/molecule-ai-plugin-*` repos have new PRs adding `gitea-merge-queue.yml` + `gitea-merge-queue.py` (sourced from core #860). PR numbers by repo:
+
+| Repo | PR# |
+|------|-----|
+| molecule-ai-plugin-browser-automation | #7 |
+| molecule-ai-plugin-ecc | #10 |
+| molecule-ai-plugin-gh-identity | #10 |
+| molecule-ai-plugin-molecule-audit | #12 |
+| molecule-ai-plugin-molecule-audit-trail | #8 |
+| molecule-ai-plugin-molecule-careful-bash | #11 |
+| molecule-ai-plugin-molecule-compliance | #12 |
+| molecule-ai-plugin-molecule-dev | #9 |
+| molecule-ai-plugin-molecule-freeze-scope | #11 |
+| molecule-ai-plugin-molecule-hitl | #12 |
+| molecule-ai-plugin-molecule-prompt-watchdog | #11 |
+| molecule-ai-plugin-molecule-security-scan | #12 |
+| molecule-ai-plugin-molecule-session-context | #8 |
+| molecule-ai-plugin-molecule-skill-code-review | #8 |
+| molecule-ai-plugin-molecule-skill-cron-learnings | #8 |
+| molecule-ai-plugin-molecule-skill-cross-vendor-review | #8 |
+| molecule-ai-plugin-molecule-skill-llm-judge | #8 |
+| molecule-ai-plugin-molecule-skill-update-docs | #8 |
+| molecule-ai-plugin-molecule-workflow-retro | #8 |
+| molecule-ai-plugin-molecule-workflow-triage | #9 |
+| molecule-ai-plugin-superpowers | #9 |
+
+All labeled `merge-queue` and approved by sdk-lead. Need admin web merge.

molecule_agent/README.md

@@ -60,7 +60,7 @@ print(f"loop exited: {terminal}")
 ```
 
 A runnable demo with full setup walkthrough lives at
-[`examples/remote-agent/`](https://git.moleculesai.app/Molecule-AI/molecule-sdk-python/-/tree/main/examples/remote-agent) — the runnable demo with full setup walkthrough.
+[`sdk/python/examples/remote-agent/`](../examples/remote-agent).
 
 ## What the SDK gives you
 
@@ -282,5 +282,5 @@ the security benefits of bearer auth until both sides upgrade.
 
 - [`molecule_plugin`](../molecule_plugin) — the *other* SDK in this
   package, for plugin authors. Different audience.
-- [`examples/remote-agent/run.py`](https://git.moleculesai.app/Molecule-AI/molecule-sdk-python/-/blob/main/examples/remote-agent/run.py)
+- [`sdk/python/examples/remote-agent/run.py`](../examples/remote-agent/run.py)
   — the runnable demo that proves all of the above end-to-end.

molecule_agent/__init__.py

@@ -20,7 +20,7 @@ Intended usage::
     env = client.pull_secrets()      # decrypted secrets dict
     client.run_heartbeat_loop()      # background heartbeat + state-poll
 
-See ``examples/remote-agent/`` for a runnable demo.
+See ``sdk/python/examples/remote-agent/`` for a runnable demo.
 
 Design notes:
 * **No async.** The SDK uses blocking ``requests`` so a remote agent author

molecule_agent/client.py

@@ -11,19 +11,10 @@ a Phase 30 endpoint:
 * :py:meth:`run_heartbeat_loop` — drives heartbeat + state-poll on a timer,
   returns when the platform reports the workspace paused or deleted.
 
-The client also exposes two inbound delivery paths for handling platform-initiated
-A2A messages:
-
-* **Push mode** — :class:`molecule_agent.a2a_server.A2AServer` hosts an HTTP server
-  in a background thread; platform pushes inbound A2A as HTTP requests. Use when the
-  agent has a publicly reachable URL (cloud VM, ngrok tunnel, etc.).
-* **Poll mode** — :class:`molecule_agent.inbound.PollDelivery` polls
-  ``GET /workspaces/:id/activity`` on a configurable interval; no public URL required.
-  The default when no explicit delivery is passed to :py:meth:`run_agent_loop`.
-
-Both feed the same :py:class:`molecule_agent.inbound.MessageHandler` callback.
-Reply routing (``/notify`` for canvas users, ``/a2a`` for peer agents) is handled
-automatically by :py:meth:`reply`.
+No inbound A2A server is bundled here yet — that requires hosting an HTTP
+endpoint the platform's proxy can reach, which is network-dependent.
+Use :class:`molecule_agent.a2a_server.A2AServer` to add inbound A2A support.
+See that module for usage and the Phase 30.8b contract.
 """
 from __future__ import annotations
 

molecule_plugin/__init__.py

@@ -26,7 +26,7 @@ Example: a minimal plugin that's installable on Claude Code and DeepAgents
         ├── claude_code.py   # `from molecule_plugin import AgentskillsAdaptor as Adaptor`
         └── deepagents.py    # same one-liner
 
-Full docs + cookiecutter template: see the repo root ``README.md``.
+Full docs + cookiecutter template: see ``sdk/python/README.md``.
 """
 
 from __future__ import annotations