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1 Commits
| Author | SHA1 | Date | |
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 Hongming Wang
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0032cfc3ce |
@@ -145,142 +145,89 @@ src/
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## MCP Tool Registry
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Full list of tools exposed by this server (87 total). Each is implemented in `src/tools/<name>.ts`.
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Full list of tools exposed by this server. Each is implemented in `src/tools/<name>.ts`.
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### Workspace Tools (8)
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### Workspace Tools
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| Tool | Description |
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|------|-------------|
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| `list_workspaces` | List all workspaces with their status, skills, and hierarchy |
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| `create_workspace` | Create a new workspace node on the canvas |
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| `get_workspace` | Get detailed information about a specific workspace |
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| `update_workspace` | Update workspace fields (name, role, tier, parent_id, position) |
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| `list_workspaces` | List all workspaces accessible to the authenticated user |
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| `create_workspace` | Create a new workspace with name, role, tier, and template |
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| `get_workspace` | Get workspace details by ID |
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| `update_workspace` | Patch workspace fields (name, tier, parent_id, etc.) |
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| `delete_workspace` | Delete a workspace (cascades to children) |
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| `restart_workspace` | Restart an offline or failed workspace |
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| `pause_workspace` | Pause a workspace (stops container, preserves config) |
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| `resume_workspace` | Resume a paused workspace |
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| `restart_workspace` | Restart all agents in a workspace (picks up new secrets/prompts) |
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### Agent Tools (6)
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### Agent Tools
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| Tool | Description |
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|------|-------------|
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| `chat_with_agent` | Send a message to a workspace agent and get a response |
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| `assign_agent` | Assign an AI model to a workspace |
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| `replace_agent` | Replace the model on an existing workspace agent |
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| `remove_agent` | Remove the agent from a workspace |
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| `move_agent` | Move an agent from one workspace to another |
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| `get_model` | Get current model configuration for a workspace |
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| `list_agents` | List agents in a workspace |
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| `get_agent` | Get agent details by ID |
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| `send_message` | Send an A2A message to an agent (returns structured response) |
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| `list_peers` | List peer agents discoverable by a given agent |
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### Delegation Tools (8)
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### Delegation Tools
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| Tool | Description |
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|------|-------------|
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| `async_delegate` | Delegate a task to another workspace (non-blocking, returns delegation_id) |
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| `check_delegations` | Check status of delegated tasks for a workspace |
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| `record_delegation` | Register an agent-initiated delegation with the activity log |
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| `update_delegation_status` | Mirror delegation status to activity_logs (completed or failed) |
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| `report_activity` | Write an arbitrary activity log row from an agent |
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| `list_activity` | List activity logs for a workspace (A2A, tasks, errors) |
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| `notify_user` | Push a notification from the agent to the canvas via WebSocket |
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| `list_traces` | List recent LLM traces from Langfuse for a workspace |
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| `delegate_task` | Delegate a task to a child workspace (sync, waits for response) |
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| `delegate_task_async` | Delegate a task to a child workspace (fire-and-forget, returns task_id) |
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### Secrets Tools (6)
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### Secrets Tools
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| Tool | Description |
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|------|-------------|
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| `set_secret` | Set an API key or environment variable for a workspace |
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| `list_secrets` | List secret keys for a workspace (values never exposed) |
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| `delete_secret` | Delete a secret from a workspace |
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| `list_global_secrets` | List global secret keys (values never exposed) |
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| `set_global_secret` | Set a global secret (available to all workspaces) |
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| `delete_global_secret` | Delete a global secret |
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| `get_secret` | Retrieve a secret value for a workspace |
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| `set_secret` | Set a key/value secret for a workspace |
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| `delete_secret` | Delete a secret |
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### Files Tools (7)
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### Files Tools
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| Tool | Description |
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|------|-------------|
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| `list_files` | List workspace config files (skills, prompts, config.yaml) |
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| `read_file` | Read a workspace config file |
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| `write_file` | Write or create a workspace config file |
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| `delete_file` | Delete a workspace file or folder |
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| `replace_all_files` | Replace all workspace config files at once |
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| `get_config` | Get workspace runtime config as JSON |
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| `update_config` | Update workspace runtime config |
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| `list_files` | List files in a workspace container |
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| `get_file` | Read a file's content |
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| `put_file` | Write or update a file in the container |
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| `delete_file` | Delete a file |
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### Memory Tools (9)
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### Memory Tools
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| Tool | Description |
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|------|-------------|
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| `commit_memory` | Store a fact in workspace memory (LOCAL, TEAM, or GLOBAL scope) |
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| `search_memory` | Search workspace memories |
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| `delete_memory` | Delete a specific memory entry |
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| `session_search` | Search recent session activity and memory (FTS) |
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| `get_shared_context` | Get the shared-context blob for a workspace |
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| `memory_set` | Set a key-value memory entry with optional TTL |
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| `memory_get` | Read a single K/V memory entry |
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| `memory_list` | List all K/V memory entries for a workspace |
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| `memory_delete_kv` | Delete a single K/V memory entry |
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| `commit_memory` | Commit a structured memory entry (with optional namespace) |
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| `recall_memory` | Search previously committed memories |
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### Plugins Tools (7)
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### Plugins Tools
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| Tool | Description |
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|------|-------------|
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| `list_plugin_registry` | List all available plugins from the registry |
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| `list_installed_plugins` | List plugins installed in a workspace |
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| `install_plugin` | Install a plugin into a workspace (auto-restarts) |
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| `uninstall_plugin` | Remove a plugin from a workspace (auto-restarts) |
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| `list_plugin_sources` | List registered plugin install-source schemes |
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| `list_available_plugins` | List plugins from registry filtered by workspace runtime |
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| `check_plugin_compatibility` | Preflight: which installed plugins would break if runtime changed? |
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| `install_plugin` | Download and install a plugin into a workspace from the registry |
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### Channels Tools (8)
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### Channels Tools
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| Tool | Description |
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|------|-------------|
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| `list_channel_adapters` | List available social channel adapters (Telegram, Slack, etc.) |
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| `list_channels` | List social channels connected to a workspace |
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| `add_channel` | Connect a social channel to a workspace |
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| `update_channel` | Update a channel's config, enabled state, or allowed users |
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| `remove_channel` | Remove a social channel from a workspace |
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| `send_channel_message` | Send an outbound message from a workspace to a channel |
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| `test_channel` | Send a test message to verify a channel connection |
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| `discover_channel_chats` | Auto-detect chat IDs for a given bot token |
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| `list_channels` | List communication channels |
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| `get_channel` | Get channel details |
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| `post_message` | Post a message to a channel |
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### Schedules Tools (6)
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### Schedules Tools
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| Tool | Description |
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|------|-------------|
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| `list_schedules` | List cron schedules for a workspace |
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| `create_schedule` | Create a cron schedule that fires a prompt on a recurring timer |
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| `update_schedule` | Update fields on an existing schedule |
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| `delete_schedule` | Delete a schedule |
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| `run_schedule` | Fire a schedule manually, bypassing its cron expression |
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| `get_schedule_history` | Get past runs of a schedule — status, start/end, output |
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| `list_schedules` | List scheduled tasks |
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| `create_schedule` | Create a new scheduled task |
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| `delete_schedule` | Delete a scheduled task |
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### Discovery Tools (14)
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### Discovery Tools
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| Tool | Description |
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|------|-------------|
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| `list_peers` | List reachable peer workspaces (siblings, children, parent) |
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| `discover_workspace` | Resolve a workspace URL by ID (for A2A communication) |
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| `check_access` | Check if two workspaces can communicate |
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| `list_events` | List structure events (global or per workspace) |
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| `list_templates` | List available workspace templates |
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| `list_org_templates` | List available org templates |
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| `import_org` | Import an org template to create an entire workspace hierarchy |
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| `import_template` | Import agent files as a new workspace template |
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| `export_bundle` | Export a workspace as a portable .bundle.json |
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| `import_bundle` | Import a workspace from a bundle JSON object |
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| `get_canvas_viewport` | Get the current canvas viewport (x, y, zoom) |
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| `set_canvas_viewport` | Persist the canvas viewport (x, y, zoom) |
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| `expand_team` | Expand a workspace into a team of sub-workspaces |
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| `collapse_team` | Collapse a team back to a single workspace |
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| `check_access` | Verify A2A access between two workspace IDs |
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### Remote Agents Tools (4)
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### Remote Agents Tools
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| Tool | Description |
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|------|-------------|
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| `list_remote_agents` | List all workspaces with runtime='external' (Phase 30 remote agents) |
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| `get_remote_agent_state` | Lightweight state poll for a remote workspace |
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| `get_remote_agent_setup_command` | Build a bash command to register an agent on a remote machine |
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| `check_remote_agent_freshness` | Check if a remote agent's heartbeat is recent |
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| `get_remote_agent_info` | Get runtime info for a remote agent |
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| `heartbeat` | Send a heartbeat to the platform |
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### Approvals Tools (4)
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### Approvals Tools
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| Tool | Description |
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|------|-------------|
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| `list_pending_approvals` | List all pending approval requests across workspaces |
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| `decide_approval` | Approve or deny a pending approval request |
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| `create_approval` | Create an approval request for a workspace |
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| `get_workspace_approvals` | List approval requests for a specific workspace |
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| `list_approvals` | List pending approvals for a workspace |
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| `approve` | Approve a pending item |
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| `reject` | Reject a pending item |
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## MCP Transport Gotchas
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@@ -1,25 +1,175 @@
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# Molecule AI MCP Server
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MCP server that exposes Molecule AI platform operations as tools for AI coding agents.
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MCP server that exposes Molecule AI platform operations as tools for AI coding agents (Claude Code, Cursor, Codex, OpenCode).
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## 87 Tools Available
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## Tools Available
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See the [full tool registry](CLAUDE.md#mcp-tool-registry) for all tools. Highlights:
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The server registers **87 tools** across 12 categories. The previous README listed 20 — this section is regenerated from `src/tools/*.ts` to match the actual surface.
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| Category | Tools |
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|----------|-------|
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| Workspace | list, create, get, update, delete, restart, pause, resume |
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| Agent | chat_with, assign, replace, remove, move, get_model |
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| Delegation | async_delegate, check_delegations, record_delegation, notify_user, list_activity |
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| Secrets | set, list, delete (workspace + global variants) |
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| Files | list, read, write, delete, replace_all, get_config, update_config |
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| Memory | commit, search, delete (HMA scopes) + memory_set/get/list/delete (K/V) |
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| Plugins | list registry, list installed, install, uninstall, list sources, check compatibility |
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| Channels | list adapters, list, add, update, remove, send, test, discover chats |
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| Schedules | list, create, update, delete, run, get history |
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| Discovery | list peers, discover, check_access, list events, import/export, canvas viewport |
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| Approvals | list pending, decide, create, get workspace approvals |
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| Remote Agents | list (runtime=external), get state, setup command, check freshness |
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| Category | Source file | Count |
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|----------|-------------|-------|
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| Workspaces | `src/tools/workspaces.ts` | 8 |
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| Agents | `src/tools/agents.ts` | 6 |
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| Secrets | `src/tools/secrets.ts` | 6 |
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| Files | `src/tools/files.ts` | 7 |
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| Memory | `src/tools/memory.ts` | 9 |
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| Plugins | `src/tools/plugins.ts` | 7 |
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| Channels | `src/tools/channels.ts` | 8 |
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| Delegation & Activity | `src/tools/delegation.ts` | 8 |
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| Schedules | `src/tools/schedules.ts` | 6 |
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| Approvals | `src/tools/approvals.ts` | 4 |
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| Discovery & Org | `src/tools/discovery.ts` | 14 |
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| Remote Agents | `src/tools/remote_agents.ts` | 4 |
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| **Total** | | **87** |
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### Workspaces
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| Tool | Description | Key params |
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|------|-------------|------------|
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| `list_workspaces` | List all workspaces with their status, skills, and hierarchy | _(none)_ |
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| `create_workspace` | Create a new workspace node on the canvas | `name`, `role?`, `template?`, `tier?`, `parent_id?`, `runtime?`, `workspace_dir?`, `workspace_access?` |
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| `get_workspace` | Get detailed information about a specific workspace | `workspace_id` |
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| `delete_workspace` | Delete a workspace (cascades to children) | `workspace_id` |
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| `restart_workspace` | Restart an offline or failed workspace | `workspace_id` |
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| `update_workspace` | Update workspace fields (name, role, tier, parent_id, position) | `workspace_id`, `name?`, `role?`, `tier?`, `parent_id?` |
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| `pause_workspace` | Pause a workspace (stops container, preserves config) | `workspace_id` |
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| `resume_workspace` | Resume a paused workspace | `workspace_id` |
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### Agents
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| Tool | Description | Key params |
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|------|-------------|------------|
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| `chat_with_agent` | Send a message to a workspace agent and get a response | `workspace_id`, `message` |
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| `assign_agent` | Assign an AI model to a workspace | `workspace_id`, `model` |
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| `replace_agent` | Replace the model on an existing workspace agent | `workspace_id`, `model` |
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| `remove_agent` | Remove the agent from a workspace | `workspace_id` |
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| `move_agent` | Move an agent from one workspace to another | `workspace_id`, `target_workspace_id` |
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| `get_model` | Get current model configuration for a workspace | `workspace_id` |
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### Secrets
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| Tool | Description | Key params |
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|------|-------------|------------|
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| `set_secret` | Set an API key or environment variable for a workspace | `workspace_id`, `key`, `value` |
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| `list_secrets` | List secret keys for a workspace (values never exposed) | `workspace_id` |
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| `delete_secret` | Delete a secret from a workspace | `workspace_id`, `key` |
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| `list_global_secrets` | List global secret keys (values never exposed) | _(none)_ |
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| `set_global_secret` | Set a global secret (available to all workspaces) | `key`, `value` |
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| `delete_global_secret` | Delete a global secret | `key` |
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### Files
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| Tool | Description | Key params |
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|------|-------------|------------|
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| `list_files` | List workspace config files (skills, prompts, config.yaml) | `workspace_id` |
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| `read_file` | Read a workspace config file | `workspace_id`, `path` |
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| `write_file` | Write or create a workspace config file | `workspace_id`, `path`, `content` |
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| `delete_file` | Delete a workspace file or folder | `workspace_id`, `path` |
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| `replace_all_files` | Replace all workspace config files at once | `workspace_id`, `files` (path → content map) |
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| `get_config` | Get workspace runtime config as JSON | `workspace_id` |
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| `update_config` | Update workspace runtime config | `workspace_id`, `config` |
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### Memory
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| Tool | Description | Key params |
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|------|-------------|------------|
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| `commit_memory` | Store a fact in workspace memory (LOCAL, TEAM, or GLOBAL scope) | `workspace_id`, `content`, `scope` |
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| `search_memory` | Search workspace memories | `workspace_id`, `query?`, `scope?` |
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| `delete_memory` | Delete a specific memory entry | `workspace_id`, `memory_id` |
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| `session_search` | Search a workspace's recent session activity and memory (FTS) | `workspace_id`, `q?`, `limit?` |
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| `get_shared_context` | Get the shared-context blob for a workspace (persistent cross-turn context) | `workspace_id` |
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| `memory_set` | Set a key-value memory entry with optional TTL (distinct from `commit_memory` which uses HMA scopes) | `workspace_id`, `key`, `value`, `ttl_seconds?` |
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| `memory_get` | Read a single K/V memory entry | `workspace_id`, `key` |
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| `memory_list` | List all K/V memory entries for a workspace | `workspace_id` |
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| `memory_delete_kv` | Delete a single K/V memory entry | `workspace_id`, `key` |
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### Plugins
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| Tool | Description | Key params |
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|------|-------------|------------|
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| `list_plugin_registry` | List all available plugins from the registry | _(none)_ |
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| `list_installed_plugins` | List plugins installed in a workspace | `workspace_id` |
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| `install_plugin` | Install a plugin into a workspace from any registered source (auto-restarts) | `workspace_id`, `source` (e.g. `local://name`, `github://owner/repo[#ref]`) |
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| `uninstall_plugin` | Remove a plugin from a workspace (auto-restarts) | `workspace_id`, `name` |
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| `list_plugin_sources` | List registered plugin install-source schemes (e.g. local, github) | _(none)_ |
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| `list_available_plugins` | List plugins from the registry filtered to ones supported by this workspace's runtime | `workspace_id` |
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| `check_plugin_compatibility` | Preflight check: which installed plugins would break if this workspace switched runtime to `<runtime>`? | `workspace_id`, `runtime` |
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### Channels
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| Tool | Description | Key params |
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|------|-------------|------------|
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| `list_channel_adapters` | List available social channel adapters (Telegram, Slack, etc.) | _(none)_ |
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| `list_channels` | List social channels connected to a workspace | `workspace_id` |
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| `add_channel` | Connect a social channel to a workspace; messages on the channel forward to the agent | `workspace_id`, `channel_type`, `config` (JSON string), `allowed_users?` |
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| `update_channel` | Update a social channel's config, enabled state, or allowed users (triggers hot reload) | `workspace_id`, `channel_id`, `config?`, `enabled?`, `allowed_users?` |
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| `remove_channel` | Remove a social channel from a workspace | `workspace_id`, `channel_id` |
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| `send_channel_message` | Send an outbound message from a workspace to its connected social channel | `workspace_id`, `channel_id`, `text` |
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| `test_channel` | Send a test message to verify a social channel connection works | `workspace_id`, `channel_id` |
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| `discover_channel_chats` | Auto-detect chat IDs / channels for a given bot token (e.g. Telegram) before creating a channel | `type`, `config` |
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### Delegation & Activity
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| Tool | Description | Key params |
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|------|-------------|------------|
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| `async_delegate` | Delegate a task to another workspace (non-blocking); returns a delegation_id immediately | `workspace_id`, `target_id`, `task` |
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| `check_delegations` | Check status of delegated tasks for a workspace (pending/completed/failed + results) | `workspace_id` |
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| `record_delegation` | Register an agent-initiated delegation with the platform's activity log | `workspace_id`, `target_id`, `task`, `delegation_id` |
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| `update_delegation_status` | Mirror an agent-initiated delegation's status to activity_logs | `workspace_id`, `delegation_id`, `status`, `error?`, `response_preview?` |
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| `report_activity` | Write an arbitrary activity log row from an agent (a2a events, tool calls, errors) | `workspace_id`, `activity_type`, `method?`, `summary?`, `status?`, `error_detail?`, `request_body?`, `response_body?`, `duration_ms?` |
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| `list_activity` | List activity logs for a workspace (A2A communications, tasks, errors) | `workspace_id`, `type?`, `limit?` |
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| `notify_user` | Push a notification from the agent to the canvas via WebSocket (toast / chat bubble) | `workspace_id`, `type` |
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| `list_traces` | List recent LLM traces from Langfuse for a workspace | `workspace_id` |
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### Schedules
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||||
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| Tool | Description | Key params |
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||||
|------|-------------|------------|
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||||
| `list_schedules` | List cron schedules for a workspace | `workspace_id` |
|
||||
| `create_schedule` | Create a cron schedule that fires a prompt on a recurring timer | `workspace_id`, `name`, `cron_expr`, `prompt`, `timezone?`, `enabled?` |
|
||||
| `update_schedule` | Update fields on an existing schedule | `workspace_id`, `schedule_id`, `name?`, `cron_expr?`, `prompt?`, `timezone?`, `enabled?` |
|
||||
| `delete_schedule` | Delete a schedule | `workspace_id`, `schedule_id` |
|
||||
| `run_schedule` | Fire a schedule manually, bypassing its cron expression | `workspace_id`, `schedule_id` |
|
||||
| `get_schedule_history` | Get past runs of a schedule (status, start/end, output preview) | `workspace_id`, `schedule_id` |
|
||||
|
||||
### Approvals
|
||||
|
||||
| Tool | Description | Key params |
|
||||
|------|-------------|------------|
|
||||
| `list_pending_approvals` | List all pending approval requests across workspaces | _(none)_ |
|
||||
| `decide_approval` | Approve or deny a pending approval request | `workspace_id`, `approval_id`, `decision` (`approved` \| `denied`) |
|
||||
| `create_approval` | Create an approval request for a workspace | `workspace_id`, `action`, `reason?` |
|
||||
| `get_workspace_approvals` | List approval requests for a specific workspace | `workspace_id` |
|
||||
|
||||
### Discovery & Org
|
||||
|
||||
| Tool | Description | Key params |
|
||||
|------|-------------|------------|
|
||||
| `list_peers` | List reachable peer workspaces (siblings, children, parent) | `workspace_id` |
|
||||
| `discover_workspace` | Resolve a workspace URL by ID (for A2A communication) | `workspace_id` |
|
||||
| `check_access` | Check if two workspaces can communicate | `caller_id`, `target_id` |
|
||||
| `list_events` | List structure events (global or per workspace) | `workspace_id?` |
|
||||
| `list_templates` | List available workspace templates | _(none)_ |
|
||||
| `list_org_templates` | List available org templates | _(none)_ |
|
||||
| `import_org` | Import an org template to create an entire workspace hierarchy | `dir` |
|
||||
| `import_template` | Import agent files as a new workspace template | `name`, `files` (path → content map) |
|
||||
| `export_bundle` | Export a workspace as a portable `.bundle.json` | `workspace_id` |
|
||||
| `import_bundle` | Import a workspace from a bundle JSON object | `bundle` |
|
||||
| `get_canvas_viewport` | Get the current canvas viewport (x, y, zoom) persisted per-user | _(none)_ |
|
||||
| `set_canvas_viewport` | Persist the canvas viewport (x, y, zoom) | `x`, `y`, `zoom` |
|
||||
| `expand_team` | Expand a workspace into a team of sub-workspaces | `workspace_id` |
|
||||
| `collapse_team` | Collapse a team back to a single workspace | `workspace_id` |
|
||||
|
||||
### Remote Agents (Phase 30)
|
||||
|
||||
Tools that surface workspaces with `runtime='external'` — agents that run on machines outside this platform's Docker network and join via HTTP.
|
||||
|
||||
| Tool | Description | Key params |
|
||||
|------|-------------|------------|
|
||||
| `list_remote_agents` | Filter the workspace list to remote agents only — id / name / status / url / `last_heartbeat_at` / uptime | _(none)_ |
|
||||
| `get_remote_agent_state` | Lightweight `{status, paused, deleted, runtime, last_heartbeat_at}` projection — faster than `get_workspace` when you only need lifecycle | `workspace_id` |
|
||||
| `get_remote_agent_setup_command` | Emit a `WORKSPACE_ID=… PLATFORM_URL=… python3 …` bash one-liner an operator can paste into a remote shell. Pass `platform_url_override` if the MCP server's `PLATFORM_URL` is localhost. | `workspace_id`, `platform_url_override?` |
|
||||
| `check_remote_agent_freshness` | Compare `last_heartbeat_at` against a threshold (default 90 s) — returns `{fresh, seconds_since_heartbeat, threshold_seconds}` | `workspace_id`, `threshold_seconds?` |
|
||||
|
||||
## Setup
|
||||
|
||||
@@ -34,7 +184,7 @@ Add to your project's `.mcp.json`:
|
||||
"command": "node",
|
||||
"args": ["./mcp-server/dist/index.js"],
|
||||
"env": {
|
||||
"MOLECULE_API_URL": "http://localhost:8080"
|
||||
"MOLECULE_URL": "http://localhost:8080"
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -52,7 +202,7 @@ Add to `.cursor/mcp.json`:
|
||||
"command": "node",
|
||||
"args": ["./mcp-server/dist/index.js"],
|
||||
"env": {
|
||||
"MOLECULE_API_URL": "http://localhost:8080"
|
||||
"MOLECULE_URL": "http://localhost:8080"
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -62,22 +212,15 @@ Add to `.cursor/mcp.json`:
|
||||
### Codex / OpenCode
|
||||
|
||||
```bash
|
||||
MOLECULE_API_URL=http://localhost:8080 node mcp-server/dist/index.js
|
||||
# Run directly
|
||||
MOLECULE_URL=http://localhost:8080 node mcp-server/dist/index.js
|
||||
```
|
||||
|
||||
## Environment Variables
|
||||
|
||||
| Variable | Default | Description |
|
||||
|----------|---------|-------------|
|
||||
| `MOLECULE_API_URL` | `http://localhost:8080` | Platform API base URL |
|
||||
| `MOLECULE_API_KEY` | — | API key for platform authentication |
|
||||
| `MCP_SERVER_PORT` | `3000` | Port (for HTTP/SSE transport) |
|
||||
|
||||
## Quick Start
|
||||
|
||||
1. `npm install && npm run build`
|
||||
2. Set `MOLECULE_API_URL` and `MOLECULE_API_KEY`
|
||||
3. `npm start` (stdio mode) or use an MCP host config
|
||||
| `MOLECULE_URL` | `http://localhost:8080` | Platform API URL |
|
||||
|
||||
## Examples
|
||||
|
||||
@@ -93,16 +236,13 @@ Agent: [calls chat_with_agent with message="Audit https://example.com for SEO"]
|
||||
|
||||
You: "What skills does the coding agent have?"
|
||||
Agent: [calls get_workspace, reads agent_card.skills]
|
||||
|
||||
You: "Run the daily digest schedule now and show me the last 3 runs"
|
||||
Agent: [calls run_schedule, then get_schedule_history]
|
||||
|
||||
You: "Connect the marketing workspace to our Telegram bot"
|
||||
Agent: [calls discover_channel_chats, then add_channel with channel_type="telegram"]
|
||||
|
||||
You: "Are any of the remote agents stale?"
|
||||
Agent: [calls list_remote_agents, then check_remote_agent_freshness for each]
|
||||
```
|
||||
|
||||
## Remote Agents (Phase 30)
|
||||
|
||||
For agents running outside the platform's Docker network, the `get_remote_agent_setup_command`
|
||||
tool generates a bash one-liner:
|
||||
|
||||
```bash
|
||||
pip install molecule-ai-sdk
|
||||
WORKSPACE_ID=... PLATFORM_URL=... python3 -c "from molecule_agent import RemoteAgentClient; ..."
|
||||
```
|
||||
|
||||
See the full tool registry in `CLAUDE.md` for all 87 tools.
|
||||
|
||||
+14
-15
@@ -177,24 +177,23 @@ test documenting the known `optional().nullable()` zod-to-json-schema quirk.
|
||||
|
||||
---
|
||||
|
||||
## KI-007 — MCP server heartbeat tools are read-only; actual heartbeat lives in the Python SDK
|
||||
## KI-007 — Heartbeat cleanup fires after SSE stream closes
|
||||
|
||||
**File:** `src/tools/remote_agents.ts` (heartbeat tool)
|
||||
**Status:** Resolved — clarified scope
|
||||
**Status:** Identified
|
||||
**Severity:** Low
|
||||
|
||||
### Clarification
|
||||
The MCP server's remote-agent tools (`list_remote_agents`, `get_remote_agent_state`,
|
||||
`check_remote_agent_freshness`, `get_remote_agent_setup_command`) are **read-only
|
||||
queries** — they do not drive any background heartbeat loop. The actual
|
||||
`run_heartbeat_loop()` that sends heartbeats from a remote agent lives in the
|
||||
Python SDK (`molecule_sdk_python/molecule_agent/client.py`).
|
||||
### Symptom
|
||||
When using SSE transport, the heartbeat mechanism does not immediately clean up
|
||||
when a stream closes. A background timer or goroutine may continue sending heartbeats
|
||||
to workspaces whose SSE connections have been closed by the client.
|
||||
|
||||
The heartbeat cleanup issue (heartbeat loop continues after the controlling MCP
|
||||
client disconnects) is tracked as **SDK KI-009** in `molecule-sdk-python/known-issues.md`.
|
||||
### Impact
|
||||
Orphaned heartbeat calls continue consuming platform API quota after the MCP client
|
||||
has disconnected. Over time this can cause the workspace to accumulate heartbeat
|
||||
sessions that never expire on the platform side.
|
||||
|
||||
### Suggested fix (SDK side)
|
||||
Expose a `stop_event` parameter or `stop()` method on `RemoteAgentClient` so the
|
||||
callers (MCP client, shell wrapper) can signal the loop to exit cleanly. The
|
||||
Python SDK's `run_heartbeat_loop()` should check `threading.Event` or accept a
|
||||
`stop_on: asyncio.Event` argument. See `molecule-sdk-python/known-issues.md`.
|
||||
### Suggested fix
|
||||
Attach a cleanup function to the SSE stream `close` event. Invalidate the heartbeat
|
||||
timer when the stream ends so no further calls are made. Document the expected
|
||||
SSE session lifecycle in the streaming convention section of CLAUDE.md.
|
||||
Generated
+22
-17
@@ -555,9 +555,10 @@
|
||||
}
|
||||
},
|
||||
"node_modules/@hono/node-server": {
|
||||
"version": "1.19.14",
|
||||
"resolved": "https://registry.npmjs.org/@hono/node-server/-/node-server-1.19.14.tgz",
|
||||
"integrity": "sha512-GwtvgtXxnWsucXvbQXkRgqksiH2Qed37H9xHZocE5sA3N8O8O8/8FA3uclQXxXVzc9XBZuEOMK7+r02FmSpHtw==",
|
||||
"version": "1.19.12",
|
||||
"resolved": "https://registry.npmjs.org/@hono/node-server/-/node-server-1.19.12.tgz",
|
||||
"integrity": "sha512-txsUW4SQ1iilgE0l9/e9VQWmELXifEFvmdA1j6WFh/aFPj99hIntrSsq/if0UWyGVkmrRPKA1wCeP+UCr1B9Uw==",
|
||||
"license": "MIT",
|
||||
"engines": {
|
||||
"node": ">=18.14.1"
|
||||
},
|
||||
@@ -2554,11 +2555,12 @@
|
||||
}
|
||||
},
|
||||
"node_modules/express-rate-limit": {
|
||||
"version": "8.5.1",
|
||||
"resolved": "https://registry.npmjs.org/express-rate-limit/-/express-rate-limit-8.5.1.tgz",
|
||||
"integrity": "sha512-5O6KYmyJEpuPJV5hNTXKbAHWRqrzyu+OI3vUnSd2kXFubIVpG7ezpgxQy76Zo5GQZtrQBg86hF+CM/NX+cioiQ==",
|
||||
"version": "8.3.2",
|
||||
"resolved": "https://registry.npmjs.org/express-rate-limit/-/express-rate-limit-8.3.2.tgz",
|
||||
"integrity": "sha512-77VmFeJkO0/rvimEDuUC5H30oqUC4EyOhyGccfqoLebB0oiEYfM7nwPrsDsBL1gsTpwfzX8SFy2MT3TDyRq+bg==",
|
||||
"license": "MIT",
|
||||
"dependencies": {
|
||||
"ip-address": "^10.2.0"
|
||||
"ip-address": "10.1.0"
|
||||
},
|
||||
"engines": {
|
||||
"node": ">= 16"
|
||||
@@ -2594,9 +2596,9 @@
|
||||
"integrity": "sha512-W+KJc2dmILlPplD/H4K9l9LcAHAfPtP6BY84uVLXQ6Evcz9Lcg33Y2z1IVblT6xdY54PXYVHEv+0Wpq8Io6zkA=="
|
||||
},
|
||||
"node_modules/fast-uri": {
|
||||
"version": "3.1.2",
|
||||
"resolved": "https://registry.npmjs.org/fast-uri/-/fast-uri-3.1.2.tgz",
|
||||
"integrity": "sha512-rVjf7ArG3LTk+FS6Yw81V1DLuZl1bRbNrev6Tmd/9RaroeeRRJhAt7jg/6YFxbvAQXUCavSoZhPPj6oOx+5KjQ==",
|
||||
"version": "3.1.0",
|
||||
"resolved": "https://registry.npmjs.org/fast-uri/-/fast-uri-3.1.0.tgz",
|
||||
"integrity": "sha512-iPeeDKJSWf4IEOasVVrknXpaBV0IApz/gp7S2bb7Z4Lljbl2MGJRqInZiUrQwV16cpzw/D3S5j5Julj/gT52AA==",
|
||||
"funding": [
|
||||
{
|
||||
"type": "github",
|
||||
@@ -2606,7 +2608,8 @@
|
||||
"type": "opencollective",
|
||||
"url": "https://opencollective.com/fastify"
|
||||
}
|
||||
]
|
||||
],
|
||||
"license": "BSD-3-Clause"
|
||||
},
|
||||
"node_modules/fb-watchman": {
|
||||
"version": "2.0.2",
|
||||
@@ -2902,9 +2905,10 @@
|
||||
"integrity": "sha512-7xgomUX6ADmcYzFik0HzAxh/73YlKR9bmFzf51CZwR+b6YtzU2m0u49hQCqV6SvlqIqsaxovfwdvbnsw3b/zpg=="
|
||||
},
|
||||
"node_modules/hono": {
|
||||
"version": "4.12.18",
|
||||
"resolved": "https://registry.npmjs.org/hono/-/hono-4.12.18.tgz",
|
||||
"integrity": "sha512-RWzP96k/yv0PQfyXnWjs6zot20TqfpfsNXhOnev8d1InAxubW93L11/oNUc3tQqn2G0bSdAOBpX+2uDFHV7kdQ==",
|
||||
"version": "4.12.10",
|
||||
"resolved": "https://registry.npmjs.org/hono/-/hono-4.12.10.tgz",
|
||||
"integrity": "sha512-mx/p18PLy5og9ufies2GOSUqep98Td9q4i/EF6X7yJgAiIopxqdfIO3jbqsi3jRgTgw88jMDEzVKi+V2EF+27w==",
|
||||
"license": "MIT",
|
||||
"engines": {
|
||||
"node": ">=16.9.0"
|
||||
}
|
||||
@@ -3011,9 +3015,10 @@
|
||||
"license": "ISC"
|
||||
},
|
||||
"node_modules/ip-address": {
|
||||
"version": "10.2.0",
|
||||
"resolved": "https://registry.npmjs.org/ip-address/-/ip-address-10.2.0.tgz",
|
||||
"integrity": "sha512-/+S6j4E9AHvW9SWMSEY9Xfy66O5PWvVEJ08O0y5JGyEKQpojb0K0GKpz/v5HJ/G0vi3D2sjGK78119oXZeE0qA==",
|
||||
"version": "10.1.0",
|
||||
"resolved": "https://registry.npmjs.org/ip-address/-/ip-address-10.1.0.tgz",
|
||||
"integrity": "sha512-XXADHxXmvT9+CRxhXg56LJovE+bmWnEWB78LB83VZTprKTmaC5QfruXocxzTZ2Kl0DNwKuBdlIhjL8LeY8Sf8Q==",
|
||||
"license": "MIT",
|
||||
"engines": {
|
||||
"node": ">= 12"
|
||||
}
|
||||
|
||||
+1
-1
@@ -29,6 +29,6 @@
|
||||
},
|
||||
"repository": {
|
||||
"type": "git",
|
||||
"url": "https://git.moleculesai.app/molecule-ai/molecule-mcp-server.git"
|
||||
"url": "https://github.com/Molecule-AI/molecule-mcp-server.git"
|
||||
}
|
||||
}
|
||||
|
||||
+2
-2
@@ -1,5 +1,3 @@
|
||||
import { error as logError } from "./utils/logger.js";
|
||||
|
||||
// Read the platform API base URL from environment.
|
||||
// Priority: MOLECULE_API_URL (canonical CLI/SDK env var, per platform docs)
|
||||
//
|
||||
@@ -21,6 +19,8 @@ export const PLATFORM_URL =
|
||||
* Shape returned by apiCall when the request fails (network error, non-2xx,
|
||||
* or non-JSON body with no error). Returned-by-value — apiCall never throws.
|
||||
*/
|
||||
import { error as logError } from "./utils/logger.js";
|
||||
|
||||
export type ApiError = { error: string; detail?: string; raw?: string; status?: number };
|
||||
|
||||
export function isApiError(v: unknown): v is ApiError {
|
||||
|
||||
@@ -85,19 +85,18 @@ export async function handleGetRemoteAgentSetupCommand(params: {
|
||||
const setupCmd = [
|
||||
`# Run on the remote machine where the agent will live.`,
|
||||
`# Requires Python 3.11+ and bash (the SDK invokes setup.sh via bash).`,
|
||||
`pip install molecule-ai-sdk # (or: pip install -e <molecule-checkout>/molecule-sdk-python)`,
|
||||
`pip install molecule-sdk # (or: pip install -e <molecule-checkout>/sdk/python)`,
|
||||
``,
|
||||
`WORKSPACE_ID=${w.id} \\`,
|
||||
`PLATFORM_URL=${targetUrl} \\`,
|
||||
`python3 -c "from molecule_agent import RemoteAgentClient; \\`,
|
||||
` c = RemoteAgentClient(workspace_id='${w.id}', platform_url='${targetUrl}'); \\`,
|
||||
` if c.load_token() is None: c.register(); \\`,
|
||||
` c = RemoteAgentClient.register_from_env(); \\`,
|
||||
` c.pull_secrets(); \\`,
|
||||
` c.run_heartbeat_loop()"`,
|
||||
``,
|
||||
`# For a richer demo (logging, graceful shutdown) see`,
|
||||
`# examples/remote-agent/run.py in the molecule-sdk-python checkout.`,
|
||||
`# The agent will register (mint + cache bearer token at`,
|
||||
`# sdk/python/examples/remote-agent/run.py in the molecule-monorepo checkout.`,
|
||||
`# The agent will register, mint its bearer token (cached at`,
|
||||
`# ~/.molecule/${w.id}/.auth_token), pull secrets, then heartbeat.`,
|
||||
].join("\n");
|
||||
return toMcpResult({
|
||||
|
||||
@@ -290,99 +290,3 @@ describe("platformGet", () => {
|
||||
});
|
||||
});
|
||||
});
|
||||
|
||||
// ---------------------------------------------------------------------------
|
||||
// remote_agents — handleGetRemoteAgentSetupCommand
|
||||
// ---------------------------------------------------------------------------
|
||||
|
||||
// remote_agents.ts reads PLATFORM_URL at module-load time from process.env.
|
||||
// We use jest.isolateModules so each test gets a fresh module context with
|
||||
// the right env var set before the module is loaded.
|
||||
const originalEnv = process.env.MOLECULE_API_URL;
|
||||
|
||||
describe("handleGetRemoteAgentSetupCommand", () => {
|
||||
beforeEach(() => {
|
||||
jest.resetModules();
|
||||
process.env.MOLECULE_API_URL = "http://localhost:8080";
|
||||
});
|
||||
|
||||
afterEach(() => {
|
||||
if (originalEnv === undefined) {
|
||||
delete process.env.MOLECULE_API_URL;
|
||||
} else {
|
||||
process.env.MOLECULE_API_URL = originalEnv;
|
||||
}
|
||||
});
|
||||
|
||||
async function loadHandlerAndMock(workspace: Record<string, unknown>) {
|
||||
let handler!: typeof import("../../src/tools/remote_agents").handleGetRemoteAgentSetupCommand;
|
||||
let mockGet!: jest.Mock;
|
||||
await new Promise<void>((resolve) => {
|
||||
jest.isolateModules(() => {
|
||||
mockGet = jest.fn().mockResolvedValue(workspace);
|
||||
jest.mock("../../src/api", () => ({
|
||||
...jest.requireActual("../../src/api"),
|
||||
platformGet: mockGet,
|
||||
}));
|
||||
const mod = require("../../src/tools/remote_agents");
|
||||
handler = mod.handleGetRemoteAgentSetupCommand;
|
||||
resolve();
|
||||
});
|
||||
});
|
||||
return { handler, mockGet };
|
||||
}
|
||||
|
||||
it("generates valid Python command with constructor + register pattern", async () => {
|
||||
const { handler } = await loadHandlerAndMock({
|
||||
id: "ws-abc123",
|
||||
name: "my-agent",
|
||||
runtime: "external",
|
||||
});
|
||||
const result = await handler({ workspace_id: "ws-abc123" });
|
||||
const parsed = JSON.parse((result.content[0] as { text: string }).text);
|
||||
expect(parsed.workspace_id).toBe("ws-abc123");
|
||||
expect(parsed.workspace_name).toBe("my-agent");
|
||||
expect(parsed.setup_command).toContain("RemoteAgentClient(workspace_id='ws-abc123'");
|
||||
expect(parsed.setup_command).not.toContain("register_from_env");
|
||||
expect(parsed.setup_command).toContain("register()");
|
||||
});
|
||||
|
||||
it("warns when PLATFORM_URL is localhost and no override is given", async () => {
|
||||
const { handler } = await loadHandlerAndMock({
|
||||
id: "ws-abc123",
|
||||
name: "my-agent",
|
||||
runtime: "external",
|
||||
});
|
||||
const result = await handler({ workspace_id: "ws-abc123" });
|
||||
const parsed = JSON.parse((result.content[0] as { text: string }).text);
|
||||
expect(parsed.warnings).toBeDefined();
|
||||
expect(parsed.warnings![0]).toContain("localhost");
|
||||
});
|
||||
|
||||
it("uses platform_url_override when provided", async () => {
|
||||
const { handler } = await loadHandlerAndMock({
|
||||
id: "ws-abc123",
|
||||
name: "my-agent",
|
||||
runtime: "external",
|
||||
});
|
||||
const result = await handler({
|
||||
workspace_id: "ws-abc123",
|
||||
platform_url_override: "https://platform.example.com",
|
||||
});
|
||||
const parsed = JSON.parse((result.content[0] as { text: string }).text);
|
||||
expect(parsed.setup_command).toContain("platform_url='https://platform.example.com'");
|
||||
expect(parsed.warnings).toBeUndefined();
|
||||
});
|
||||
|
||||
it("returns error when workspace is not runtime=external", async () => {
|
||||
const { handler } = await loadHandlerAndMock({
|
||||
id: "ws-abc123",
|
||||
name: "my-agent",
|
||||
runtime: "docker",
|
||||
});
|
||||
const result = await handler({ workspace_id: "ws-abc123" });
|
||||
const parsed = JSON.parse((result.content[0] as { text: string }).text);
|
||||
expect(parsed.error).toContain("not external");
|
||||
expect(parsed.setup_command).toBeUndefined();
|
||||
});
|
||||
});
|
||||
|
||||
@@ -1,164 +0,0 @@
|
||||
/**
|
||||
* Unit tests for src/tools/remote_agents.ts
|
||||
*
|
||||
* Tests handleGetRemoteAgentSetupCommand which generates a Python bootstrap
|
||||
* command for remote agents. Key edge cases:
|
||||
* - localhost warning when PLATFORM_URL is localhost and no override given
|
||||
* - platform_url_override bypasses localhost warning
|
||||
* - non-external runtime returns error
|
||||
* - workspace not found returns error
|
||||
*/
|
||||
|
||||
import { toMcpResult } from "../../src/api";
|
||||
|
||||
// ---------------------------------------------------------------------------
|
||||
// Helpers
|
||||
// ---------------------------------------------------------------------------
|
||||
|
||||
/** Factory so each fetch call gets a fresh Response (bodies can only be read once). */
|
||||
function makeFetchResponse(body: unknown, init: ResponseInit = {}): Response {
|
||||
const text = typeof body === "string" ? body : JSON.stringify(body);
|
||||
return new Response(text, {
|
||||
status: init.status ?? 200,
|
||||
statusText: init.statusText,
|
||||
headers: init.headers as HeadersInit,
|
||||
});
|
||||
}
|
||||
|
||||
type RemoteAgentsHandler = {
|
||||
handleGetRemoteAgentSetupCommand: (
|
||||
params: { workspace_id: string; platform_url_override?: string }
|
||||
) => Promise<ReturnType<typeof toMcpResult>>;
|
||||
};
|
||||
|
||||
/**
|
||||
* Dynamically import the remote_agents module with a mocked platformGet.
|
||||
* Must be called inside jest.isolateModules() with MOLECULE_API_URL set.
|
||||
*/
|
||||
async function loadHandlerWithMock(
|
||||
mockPlatformGet: jest.Mock,
|
||||
): Promise<RemoteAgentsHandler> {
|
||||
let handler!: RemoteAgentsHandler;
|
||||
await new Promise<void>((resolve) => {
|
||||
jest.isolateModules(() => {
|
||||
jest.mock("../../src/api", () => ({
|
||||
...jest.requireActual("../../src/api"),
|
||||
platformGet: mockPlatformGet,
|
||||
}));
|
||||
const mod = require("../../src/tools/remote_agents") as RemoteAgentsHandler;
|
||||
handler = mod;
|
||||
resolve();
|
||||
});
|
||||
});
|
||||
return handler;
|
||||
}
|
||||
|
||||
// ---------------------------------------------------------------------------
|
||||
// handleGetRemoteAgentSetupCommand tests
|
||||
// ---------------------------------------------------------------------------
|
||||
|
||||
describe("handleGetRemoteAgentSetupCommand", () => {
|
||||
beforeEach(() => {
|
||||
jest.resetModules();
|
||||
});
|
||||
|
||||
it("returns a setup command with correct RemoteAgentClient API call", async () => {
|
||||
const mockGet = jest.fn().mockResolvedValue({
|
||||
id: "ws-abc123",
|
||||
name: "test-agent",
|
||||
runtime: "external",
|
||||
});
|
||||
|
||||
const handler = await loadHandlerWithMock(mockGet);
|
||||
const result = await handler.handleGetRemoteAgentSetupCommand({
|
||||
workspace_id: "ws-abc123",
|
||||
});
|
||||
|
||||
expect(result.content[0].text).toContain("ws-abc123");
|
||||
expect(result.content[0].text).toContain("molecule_agent import RemoteAgentClient");
|
||||
// Must use constructor + load_token pattern, NOT the non-existent register_from_env()
|
||||
expect(result.content[0].text).not.toContain("register_from_env()");
|
||||
expect(result.content[0].text).toContain("load_token()");
|
||||
expect(result.content[0].text).toContain("pull_secrets()");
|
||||
expect(result.content[0].text).toContain("run_heartbeat_loop()");
|
||||
});
|
||||
|
||||
it("returns a localhost warning when PLATFORM_URL is localhost and no override given", async () => {
|
||||
// Set localhost as the platform URL before loading the module
|
||||
process.env.MOLECULE_API_URL = "http://localhost:8080";
|
||||
|
||||
const mockGet = jest.fn().mockResolvedValue({
|
||||
id: "ws-abc123",
|
||||
name: "test-agent",
|
||||
runtime: "external",
|
||||
});
|
||||
|
||||
const handler = await loadHandlerWithMock(mockGet);
|
||||
const result = await handler.handleGetRemoteAgentSetupCommand({
|
||||
workspace_id: "ws-abc123",
|
||||
});
|
||||
|
||||
const parsed = JSON.parse(result.content[0].text);
|
||||
expect(parsed.warnings).toBeDefined();
|
||||
expect(parsed.warnings[0]).toContain("localhost");
|
||||
expect(parsed.warnings[0]).toContain("platform_url_override");
|
||||
|
||||
delete process.env.MOLECULE_API_URL;
|
||||
});
|
||||
|
||||
it("platform_url_override bypasses the localhost warning", async () => {
|
||||
// Even with localhost as the base URL, passing an override suppresses the warning
|
||||
process.env.MOLECULE_API_URL = "http://localhost:8080";
|
||||
|
||||
const mockGet = jest.fn().mockResolvedValue({
|
||||
id: "ws-abc123",
|
||||
name: "test-agent",
|
||||
runtime: "external",
|
||||
});
|
||||
|
||||
const handler = await loadHandlerWithMock(mockGet);
|
||||
const result = await handler.handleGetRemoteAgentSetupCommand({
|
||||
workspace_id: "ws-abc123",
|
||||
platform_url_override: "https://platform.example.com",
|
||||
});
|
||||
|
||||
const parsed = JSON.parse(result.content[0].text);
|
||||
expect(parsed.warnings).toBeUndefined();
|
||||
expect(parsed.platform_url).toBe("https://platform.example.com");
|
||||
|
||||
delete process.env.MOLECULE_API_URL;
|
||||
});
|
||||
|
||||
it("returns error when workspace runtime is not 'external'", async () => {
|
||||
const mockGet = jest.fn().mockResolvedValue({
|
||||
id: "ws-abc123",
|
||||
name: "docker-agent",
|
||||
runtime: "docker",
|
||||
});
|
||||
|
||||
const handler = await loadHandlerWithMock(mockGet);
|
||||
const result = await handler.handleGetRemoteAgentSetupCommand({
|
||||
workspace_id: "ws-abc123",
|
||||
});
|
||||
|
||||
const parsed = JSON.parse(result.content[0].text);
|
||||
expect(parsed.error).toContain("not external");
|
||||
expect(parsed.error).toContain("runtime='external'");
|
||||
expect(parsed.actual_runtime).toBe("docker");
|
||||
});
|
||||
|
||||
it("returns error when workspace is not found", async () => {
|
||||
const mockGet = jest.fn().mockResolvedValue({
|
||||
error: "not found",
|
||||
detail: "workspace ws-missing does not exist",
|
||||
});
|
||||
|
||||
const handler = await loadHandlerWithMock(mockGet);
|
||||
const result = await handler.handleGetRemoteAgentSetupCommand({
|
||||
workspace_id: "ws-missing",
|
||||
});
|
||||
|
||||
const parsed = JSON.parse(result.content[0].text);
|
||||
expect(parsed.error).toBeDefined();
|
||||
});
|
||||
});
|
||||
Reference in New Issue
Block a user